Archive

Monthly Archives: July 2017

0) enthought Python distribution

https://www.enthought.com/products/epd/

This seems like a good approach but I couldn’t get it to install

1) General info

How to Set Up a Python Development Environment on Windows

https://www.davidbaumgold.com/tutorials/set-up-python-windows/

 

2) A good IDE: Sublime text:

https://www.sublimetext.com/

 

3) Installing curl for downloading from internet

For installing curl after an initial cygwin installation

How do I install cURL on cygwin?

https://stackoverflow.com/questions/3647569/how-do-i-install-curl-on-cygwin

Scroll down for how to do this from the windows command line and within cygwin; note that the name of the cygwin installer might vary from what is listed in teh answer.

 

4)Add python to you path:  Go to Control Panel, System, Advanced system settings, click on Environment Variables, click on Path, ad something like “;C:Python27”.  See Haddock and Dunn Practical computing for biologists  pg 456 for more details.

4)Install ez_setup.py; uses wget

https://serverfault.com/questions/7282/how-to-run-easy-install-in-cygwin

 

On getting scipy

Installing SciPy, NumPy and matplotlib Under Cygwin

https://www.codefull.org/2015/12/installing-scipy-numpy-and-matplotlib-under-cygwin/

 

extracting tarballs

How To Extract .tar.gz Files using Linux Command Line

 

 

Information on pip, which is installed for me automatically

https://stackoverflow.com/questions/30863501/installing-new-versions-of-python-on-cygwin-does-not-install-pip

 

On installing setup tools

https://packaging.python.org/tutorials/installing-packages/

 

On wheel files .whl

https://pip.pypa.io/en/latest/user_guide/#installing-from-wheels

 

This looks useful:

Getting to Know the Command Line

https://www.davidbaumgold.com/tutorials/command-line/

 

 

This looks useful

https://datanitro.com/blog/python_on_windows

GitHub For Beginners: Don’t Get Scared, Get Started

https://readwrite.com/2013/09/30/understanding-github-a-journey-for-beginners-part-1/

General introduction, starting with downloading git and getting it working via the command line tool that comes with git.

 

GitHub For Beginners: Commit, Push And Go

https://readwrite.com/2013/10/02/github-for-beginners-part-2/

Follow up to “GitHub for Beginners: Don’t get scared, Get Started”

 

Curating Research Assets in Behavioral Sciences: A Tutorial on the Git Version Control System

https://osf.io/preprints/psyarxiv/6tzh8/ (pdf)

Git for Scientists: A Tutorial

http://nyuccl.org/pages/GitTutorial/

 

 

 

rstudio.com: Version Control with Git and SVN

https://support.rstudio.com/hc/en-us/articles/200532077-Version-Control-with-Git-and-SVN

The official RStudio outline of the technical details.  Not much on getting git to work, mostly on how to use it via RStudio.

 

An introduction to Git and how to use it with RStudio

http://r-bio.github.io/intro-git-rstudio/

General introduction to version control

 

The Basic Workflow of Version Control

https://www.git-tower.com/blog/workflow-of-version-control

Comprehensive infographic on version control workflows with git